# Related Papers

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This list gathers works that use the GlobalBioIm library. If you want to add your work in this list, do not hesitate to contact us

## Papers with open-source code

**[14] Mechanical artifacts in optical projection tomography: classification and automatic calibration**

Y. Liu, J. Dong, T-a. Pham, F. Marelli, and M. Unser.

**[13] A constrained method for lensless coherent imaging of thin samples**

F. Soulez, M. Rostykus, C. Moser, and M. Unser.

**[12] REXPACO: an algorithm for high contrast reconstruction of the circumstellar environment by angular differential imaging**

O. Flasseur, S. Thé, L. Denis, E. Thiébaut, and M. Langlois.

**[11] UVTomo-GAN: An adversarial learning based approach for unknown view X-ray tomographic reconstruction**

M. Zehni, and Z. Zhao.

**[10] Gauging diffraction patterns: field of view and bandwidth estimation in lensless**

F. Soulez.

**[9] Multi-Kernel Regression with Sparsity Constraint**

S. Aziznejad, and M. Unser.

**[8] PIC: a data reduction algorithm for integral field spectrographs-Application to the SPHERE instrument**

A. Berdeu, F. Soulez, L. Denis, M. Langlois, and E. Thiébaut.

**[7] Joint Angular Refinement and Reconstruction for Single-Particle Cryo-EM**

M. Zehni, L. Donati, E. Soubies, Z.J. Zhao, and M. Unser.

**[6] Three-Dimensional Optical Diffraction Tomography With Lippmann-Schwinger Model**

T.-A. Pham, E. Soubies, A. Ayoub, J. Lim, D. Psaltis, and M. Unser.

**[5] Computational Super-Sectioning for Single-Slice Structured Illumination Microscopy**

E. Soubies and M. Unser.

**[4] Improving 3D MA-TIRF Reconstruction with Deconvolution and Background Estimation**

E. Soubies, L. Blanc-Feraud, S. Schaub, and E. Van Obberghen-Schilling.

**[3] Nanometric Axial Resolution of Fibronectin Assembly Units Achieved with an Efficient Reconstruction Approach for Multi-Angle-TIRF Microscopy**

E. Soubies, A. Radwanska, D. Grall, L. Blanc-Feraud, E. Van Obberghen-Schilling, and S. Schaub.

**[2] Region of interest X-ray computed tomography via corrected back projection**

M. McCann, L. Vilaclara, and M. Unser.

## Other papers

**[31] A Statistical Framework to Investigate the Optimality of Neural Networks for Inverse Problems**

ArXiv preprint
[Paper]

P. Bohra, P. Pla, J-F. Giovannelli, and M. Unser.

**[30] Diffraction Tomography with Helmholtz Equation: Efficient and Robust Multigrid-Based Solver**

ArXiv preprint
[Paper]

T. Hong, T.-A. Pham, E. Treister, and M. Unser.

**[29] Accurate unsupervised estimation of aberrations in digital holographic microscopy for improved quantitative reconstruction**

Optics Express, 30-21, pp. 38383-38404, 2022.
[Paper]

D. Brault, T. Olivier, F. Soulez, S. Joshi, N. Faure, and C. Fournier

**[28] An Adversarial Learning Based Approach for Unknown View Tomographic Reconstruction**

IEEE Transactions on Computational Imaging, 8, pp. 705 - 720, 2022.
[Paper]

M. Zehni, and Z. Zhao.

**[27] Coupled Splines for Sparse Curve Fitting**

IEEE Transactions on Image Processing, 31, pp. 4707 - 4718, 2022.
[Paper]

I. L. Jover, T. Debarre, S. Aziznejad, and M. Unser.

**[26] First observation of a quadruple asteroid-Detection of a third moon around (130) Elektra with SPHERE/IFS**

Astronomy & Astrophysics, 658, 2022.
[Paper]

A. Berdeu, M. Langlois, and V. Vachier.

**[25] Automatic numerical focus plane estimation in digital holographic microscopy using calibration beads**

Applied optics, 61-5, 2022.
[Paper]

D. Brault, C. Fournier, T. Olivier, N. Faure, S. Dixneuf, L. Thibon, L. Mees, and L. Denis.

**[24] Sparsest piecewise-linear regression of one-dimensional data**

Journal of Computational and Applied Mathematics, 406, 2022.
[Paper]

T. Debarre, Q. Denoyelle, M. Unser, and J. Fageot.

**[23] Comparison of linear and nonlinear deconvolution algorithms for co-optimization of depth-of-field enhancing binary phase masks**

OSA Continuum, 4, pp. 589-601, 2021
[Paper]

O. Lévêque, C. Kulcsár, and F. Goudail.

**[22] Joint reconstruction of an in-focus image and of the background signal in in-line holographic microscopy**

Optics and Lasers in Engineering, 146, 2021.
[Paper]

A. Berdeu, T. Olivier, F. Momey, L. Denis, F. Pinston, N. Faure, C. Fournier.

**[21] Optical diffraction tomography from single-molecule localization microscopy**

Optics Communications, 499, 2021.
[Paper]

T.-A. Pham, E. Soubies, F. Soulez, and M. Unser.

**[20] Diffraction Tomography from single-molecule localization microscopy: Numerical feasibility**

Proceedings of ISBI, 2021.
[Paper]

T.-A. Pham, E. Soubies, F. Soulez, and M. Unser.

**[19] Continuous-Domain Signal Reconstruction Using L_p-Norm Regularization**

IEEE Transactions on Signal Processing, 68, pp. 4543 - 4554, 2020.
[Paper]

P. Bohra and M. Unser.

**[18] Hessian Splines for Scanning Transmission X-Ray Microscopy**

Proceedings of ISBI, 2020.
[Paper]

T. Debarre, B. Watts, B. Rösner, and M. Unser.

**[17] Adaptive Regularization for Three-dimensional Optical Diffraction Tomography**

Proceedings of ISBI, 2020.
[Paper]

T.-A. Pham, E. Soubies, A. Ayoub, D. Psaltis, and M. Unser.

**[16] Deep-learning projector for optical diffraction tomography**

Optics Express, 28-3, pp. 3905-3921, 2020.
[Paper]

F. Yang, T. A. Pham, H. Gupta, M. Unser, and J. Ma.

**[15] From Fienup’s phase retrieval techniques to regularized inversion for in-line holography: tutorial**

JOSA A, 36-12, D62-D80, 2019.
[Paper]

F. Momey, L. Denis, T. Olivier, and C. Fournier.

**[14] Hybrid-Spline Dictionaries for Continuous-Domain Inverse Problems**

IEEE Transactions on Signal Processing, 67-22, pp. 5824-5836, 2019.
[Paper]

T. Debarre, S. Aziznejad, and M. Unser.

**[13] Reconstruction of in-line holograms: combining model-based and regularized inversion**

Optics express, 27-10, pp. 14951-14968, 2019.
[Paper]

A. Berdeu, O. Flasseur, L. Méès, L. Denis, F. Momey, T. Olivier, N. Grosjean, and C. Fournier.

**[12] B-Spline-Based Exact Discretization of Continuous-Domain Inverse Problems with Generalized TV Regularization**

IEEE Transactions on Information Theory, 65-7, pp.4457 - 4470, 2019.
[Paper]

T. Debarre, J. Fageot, H. Gupta, and M. Unser.

**[11] Geometric Invariants for Sparse Unknown View Tomography**

Proceedings of ICASSP, 2019.
[Paper]

M. Zehni, S. Huang, I. Dokmanić, and Z. Zhao.

**[10] Solving Continuous-domain Problems Exactly with Multiresolution B-splines**

Proceedings of ICASSP, 2019.
[Paper]

T. Debarre, J. Fageot, H. Gupta, and M. Unser.

**[9] Inner-Loop-Free ADMM for Cryo-EM**

Proceedings of ISBI, 2019.
[Paper]

L. Donati, E. Soubies, and M. Unser.

**[8] Joint density map and continuous angular refinement in cryo-electron microscopy**

Electronic Imaging, 13, pp. 133-1, 2019.
[Paper]

M. Zehni, L. Donati, E. Soubies, Z. J. Zhao, M. N. Do, and M. Unser.

**[7] Phaseless Diffraction Tomography with Regularized Beam Propagation**

Proceedings of ISBI, 2018.
[Paper]

T.-A. Pham, E. Soubies, J. Lim, A. Goy, F. Soulez, D. Psaltis and M. Unser.

**[6] Imaging neural activity in the ventral nerve cord of behaving adult Drosophila**

Nature communications, 9-1, pp. 4390, 2018.
[Paper]

C.-L. Chen, L. Hermans, M. Viswanathan, D. Fortun, F. Aymanns, M. Unser, A. Cammarato, M. Dickinson, and P. Ramdya.

**[5] Versatile Reconstruction Framework for Diffraction Tomography with Intensity Measurements and Multiple Scattering**

Optics Express, 26-3, pp. 2749-2763, 2018.
[Paper]

T.-A. Pham, E. Soubies, J. Lim, A. Goy, F. Soulez, D. Psaltis and M. Unser.

**[4] Deep Convolutional Neural Network for Inverse Problems in Imaging**

IEEE Transactions on Image Processing, 26-9, pp. 4509 - 4522, 2017.
[Paper]

K.H. Jin, M.T. McCann, E. Froustey, and M. Unser.

**[3] High-Quality Parallel-Ray X-Ray CT Back Projection Using Optimized Interpolation**

IEEE Transactions on Image Processing, 26-10, pp. 4639 - 4647, 2017.
[Paper]

M.T. McCann and M. Unser.

**[2] Compact lensless phase imager**

Optics Express, Optical Society of America, 2017, 25-4, pp.4438-4445, 2017.
[Paper]

M. Rostykus, F. Soulez, M. Unser, C. Moser.

**[1] Compact in-line lensfree digital holographic microscope**

Methods, Elsevier, 136, pp. 17-23, 2017,
[Paper]

M. Rostykus, F. Soulez, M. Unser, C. Moser.