Related Papers
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This list gathers works that use the GlobalBioIm library. If you want to add your work in this list, do not hesitate to contact us
Papers with open-source code
[15] Surpassing Light Inhomogeneities in Structured-Illumination Microscopy with FlexSIM
E. Soubies, A. Nogueron, F. Pelletier, T. Mangeat, C. Leterrier, M. Unser, and D. Sage
[14] Mechanical artifacts in optical projection tomography: classification and automatic calibration
Y. Liu, J. Dong, T-a. Pham, F. Marelli, and M. Unser.
[13] A constrained method for lensless coherent imaging of thin samples
F. Soulez, M. Rostykus, C. Moser, and M. Unser.
[12] REXPACO: an algorithm for high contrast reconstruction of the circumstellar environment by angular differential imaging
O. Flasseur, S. Thé, L. Denis, E. Thiébaut, and M. Langlois.
[11] UVTomo-GAN: An adversarial learning based approach for unknown view X-ray tomographic reconstruction
M. Zehni, and Z. Zhao.
[10] Gauging diffraction patterns: field of view and bandwidth estimation in lensless
F. Soulez.
[9] Multi-Kernel Regression with Sparsity Constraint
S. Aziznejad, and M. Unser.
[8] PIC: a data reduction algorithm for integral field spectrographs-Application to the SPHERE instrument
A. Berdeu, F. Soulez, L. Denis, M. Langlois, and E. Thiébaut.
[7] Joint Angular Refinement and Reconstruction for Single-Particle Cryo-EM
M. Zehni, L. Donati, E. Soubies, Z.J. Zhao, and M. Unser.
[6] Three-Dimensional Optical Diffraction Tomography With Lippmann-Schwinger Model
T.-A. Pham, E. Soubies, A. Ayoub, J. Lim, D. Psaltis, and M. Unser.
[5] Computational Super-Sectioning for Single-Slice Structured Illumination Microscopy
E. Soubies and M. Unser.
[4] Improving 3D MA-TIRF Reconstruction with Deconvolution and Background Estimation
E. Soubies, L. Blanc-Feraud, S. Schaub, and E. Van Obberghen-Schilling.
[3] Nanometric Axial Resolution of Fibronectin Assembly Units Achieved with an Efficient Reconstruction Approach for Multi-Angle-TIRF Microscopy
E. Soubies, A. Radwanska, D. Grall, L. Blanc-Feraud, E. Van Obberghen-Schilling, and S. Schaub.
[2] Region of interest X-ray computed tomography via corrected back projection
M. McCann, L. Vilaclara, and M. Unser.
Other papers
[38] Fourier Analysis of Interference Scanning Optical Probe Microscopy
ArXiv preprint
[Paper]
E. Soubies, and W. Bacsa
[37] Blind and robust estimation of adaptive optics point spread function and diffuse halo with sharp-edged objects-Application to asteroid deconvolution and moon enhancement
Astronomy & Astrophysics, 2024
[Paper]
A. Berdeu
[36] Inverse problems based self-calibrated reconstruction for tomographic diffractive microscopy
Unconventional Optical Imaging IV, SPIE, pp. 4–12, 2024
[Paper]
D. Brault, F. Momey, M. Debailleul, N. Verrier, and O. Haeberlé
[35] Inverse Problems for Image Reconstruction in Holography
In book: Unconventional Optical Imaging for Biology, 2024
[Chapter]
F. Soulez, and E. Thiebaut
[34] A Mini-Batch Quasi-Newton Proximal Method for Constrained Total-Variation Nonlinear Image Reconstruction
ArXiv preprint
[Paper]
T. Hong, T.-A. Pham, I. Yavneh, and M. Unser.
[33] Diffraction Tomography with Helmholtz Equation: Efficient and Robust Multigrid-Based Solver
ArXiv preprint
[Paper]
T. Hong, T.-A. Pham, E. Treister, and M. Unser.
[32] Multispectral in-line hologram reconstruction with aberration compensation applied to Gram-stained bacteria microscopy
Scientific Reports, 13, 14437, 2023.
[Paper]
D. Brault, T. Olivier, N. Faure, S. Dixneuf, C. Kolytcheff, E. Charmette, F. Soulez & C. Fournier.
[31] A Statistical Framework to Investigate the Optimality of Neural Networks for Inverse Problems
IEEE Transactions on Signal Processing, 71, pp. 2043 - 2055, 2023.
[Paper]
P. Bohra, P. Pla, J-F. Giovannelli, and M. Unser.
[30] TV-based spline reconstruction with Fourier measurements: Uniqueness and convergence of grid-based methods
Journal of Computational and Applied Mathematics, 422, 2023.
[Paper]
T. Debarre, Q. Denoyelle, and J. Fageot.
[29] Accurate unsupervised estimation of aberrations in digital holographic microscopy for improved quantitative reconstruction
Optics Express, 30-21, pp. 38383-38404, 2022.
[Paper]
D. Brault, T. Olivier, F. Soulez, S. Joshi, N. Faure, and C. Fournier
[28] An Adversarial Learning Based Approach for Unknown View Tomographic Reconstruction
IEEE Transactions on Computational Imaging, 8, pp. 705 - 720, 2022.
[Paper]
M. Zehni, and Z. Zhao.
[27] Coupled Splines for Sparse Curve Fitting
IEEE Transactions on Image Processing, 31, pp. 4707 - 4718, 2022.
[Paper]
I. L. Jover, T. Debarre, S. Aziznejad, and M. Unser.
[26] First observation of a quadruple asteroid-Detection of a third moon around (130) Elektra with SPHERE/IFS
Astronomy & Astrophysics, 658, 2022.
[Paper]
A. Berdeu, M. Langlois, and V. Vachier.
[25] Automatic numerical focus plane estimation in digital holographic microscopy using calibration beads
Applied optics, 61-5, 2022.
[Paper]
D. Brault, C. Fournier, T. Olivier, N. Faure, S. Dixneuf, L. Thibon, L. Mees, and L. Denis.
[24] Sparsest piecewise-linear regression of one-dimensional data
Journal of Computational and Applied Mathematics, 406, 2022.
[Paper]
T. Debarre, Q. Denoyelle, M. Unser, and J. Fageot.
[23] Comparison of linear and nonlinear deconvolution algorithms for co-optimization of depth-of-field enhancing binary phase masks
OSA Continuum, 4, pp. 589-601, 2021
[Paper]
O. Lévêque, C. Kulcsár, and F. Goudail.
[22] Joint reconstruction of an in-focus image and of the background signal in in-line holographic microscopy
Optics and Lasers in Engineering, 146, 2021.
[Paper]
A. Berdeu, T. Olivier, F. Momey, L. Denis, F. Pinston, N. Faure, C. Fournier.
[21] Optical diffraction tomography from single-molecule localization microscopy
Optics Communications, 499, 2021.
[Paper]
T.-A. Pham, E. Soubies, F. Soulez, and M. Unser.
[20] Diffraction Tomography from single-molecule localization microscopy: Numerical feasibility
Proceedings of ISBI, 2021.
[Paper]
T.-A. Pham, E. Soubies, F. Soulez, and M. Unser.
[19] Continuous-Domain Signal Reconstruction Using L_p-Norm Regularization
IEEE Transactions on Signal Processing, 68, pp. 4543 - 4554, 2020.
[Paper]
P. Bohra and M. Unser.
[18] Hessian Splines for Scanning Transmission X-Ray Microscopy
Proceedings of ISBI, 2020.
[Paper]
T. Debarre, B. Watts, B. Rösner, and M. Unser.
[17] Adaptive Regularization for Three-dimensional Optical Diffraction Tomography
Proceedings of ISBI, 2020.
[Paper]
T.-A. Pham, E. Soubies, A. Ayoub, D. Psaltis, and M. Unser.
[16] Deep-learning projector for optical diffraction tomography
Optics Express, 28-3, pp. 3905-3921, 2020.
[Paper]
F. Yang, T. A. Pham, H. Gupta, M. Unser, and J. Ma.
[15] From Fienup’s phase retrieval techniques to regularized inversion for in-line holography: tutorial
JOSA A, 36-12, D62-D80, 2019.
[Paper]
F. Momey, L. Denis, T. Olivier, and C. Fournier.
[14] Hybrid-Spline Dictionaries for Continuous-Domain Inverse Problems
IEEE Transactions on Signal Processing, 67-22, pp. 5824-5836, 2019.
[Paper]
T. Debarre, S. Aziznejad, and M. Unser.
[13] Reconstruction of in-line holograms: combining model-based and regularized inversion
Optics express, 27-10, pp. 14951-14968, 2019.
[Paper]
A. Berdeu, O. Flasseur, L. Méès, L. Denis, F. Momey, T. Olivier, N. Grosjean, and C. Fournier.
[12] B-Spline-Based Exact Discretization of Continuous-Domain Inverse Problems with Generalized TV Regularization
IEEE Transactions on Information Theory, 65-7, pp.4457 - 4470, 2019.
[Paper]
T. Debarre, J. Fageot, H. Gupta, and M. Unser.
[11] Geometric Invariants for Sparse Unknown View Tomography
Proceedings of ICASSP, 2019.
[Paper]
M. Zehni, S. Huang, I. Dokmanić, and Z. Zhao.
[10] Solving Continuous-domain Problems Exactly with Multiresolution B-splines
Proceedings of ICASSP, 2019.
[Paper]
T. Debarre, J. Fageot, H. Gupta, and M. Unser.
[9] Inner-Loop-Free ADMM for Cryo-EM
Proceedings of ISBI, 2019.
[Paper]
L. Donati, E. Soubies, and M. Unser.
[8] Joint density map and continuous angular refinement in cryo-electron microscopy
Electronic Imaging, 13, pp. 133-1, 2019.
[Paper]
M. Zehni, L. Donati, E. Soubies, Z. J. Zhao, M. N. Do, and M. Unser.
[7] Phaseless Diffraction Tomography with Regularized Beam Propagation
Proceedings of ISBI, 2018.
[Paper]
T.-A. Pham, E. Soubies, J. Lim, A. Goy, F. Soulez, D. Psaltis and M. Unser.
[6] Imaging neural activity in the ventral nerve cord of behaving adult Drosophila
Nature communications, 9-1, pp. 4390, 2018.
[Paper]
C.-L. Chen, L. Hermans, M. Viswanathan, D. Fortun, F. Aymanns, M. Unser, A. Cammarato, M. Dickinson, and P. Ramdya.
[5] Versatile Reconstruction Framework for Diffraction Tomography with Intensity Measurements and Multiple Scattering
Optics Express, 26-3, pp. 2749-2763, 2018.
[Paper]
T.-A. Pham, E. Soubies, J. Lim, A. Goy, F. Soulez, D. Psaltis and M. Unser.
[4] Deep Convolutional Neural Network for Inverse Problems in Imaging
IEEE Transactions on Image Processing, 26-9, pp. 4509 - 4522, 2017.
[Paper]
K.H. Jin, M.T. McCann, E. Froustey, and M. Unser.
[3] High-Quality Parallel-Ray X-Ray CT Back Projection Using Optimized Interpolation
IEEE Transactions on Image Processing, 26-10, pp. 4639 - 4647, 2017.
[Paper]
M.T. McCann and M. Unser.
[2] Compact lensless phase imager
Optics Express, Optical Society of America, 2017, 25-4, pp.4438-4445, 2017.
[Paper]
M. Rostykus, F. Soulez, M. Unser, C. Moser.
[1] Compact in-line lensfree digital holographic microscope
Methods, Elsevier, 136, pp. 17-23, 2017,
[Paper]
M. Rostykus, F. Soulez, M. Unser, C. Moser.