GlobalBioIm Library
1.2
General
Download or Clone (v 1.2)
Important Information
Examples
Graphical User Interface (GUI)
Related Papers
Conditions of Use
Technical Documentation
Abstract Classes
Linear Operators (LinOp)
Non-Linear Operators
Cost Functions (Cost)
Optimization Algorithms (Opti)
List of Methods
List of Properties
Speedup with GPU
Links
Biomedical Imaging Group
Contact
GlobalBioIm Library
Index
Index
A
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C
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D
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E
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I
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L
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M
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N
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O
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P
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R
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S
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T
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U
A
Abstract (module)
Abstract.OperationsOnMaps (module)
apply() (Abstract.Map method)
apply_() (Abstract.Map method)
(Abstract.OperationsOnMaps.CostMultiplication method)
(Abstract.OperationsOnMaps.CostPartialSummation method)
(Abstract.OperationsOnMaps.LinOpAdjoint method)
(Abstract.OperationsOnMaps.LinOpComposition method)
(Abstract.OperationsOnMaps.MapComposition method)
(Abstract.OperationsOnMaps.MapInversion method)
(Abstract.OperationsOnMaps.MapMultiplication method)
(Abstract.OperationsOnMaps.MapSummation method)
(Cost.CostConst method)
(Cost.CostGoodRoughness method)
(Cost.CostHyperBolic method)
(Cost.CostKullLeib method)
(Cost.CostL1 method)
(Cost.CostL2 method)
(Cost.CostL2Composition method)
(Cost.CostLinear method)
(Cost.CostMixNorm21 method)
(Cost.CostMixNorm21NonNeg method)
(Cost.CostMixNormSchatt1 method)
(Cost.CostRobustPenalization method)
(Cost.IndicatorFunctions.CostComplexRing method)
(Cost.IndicatorFunctions.CostRectangle method)
(LinOp.LinOpBroadcast method)
(LinOp.LinOpBroadcastMatrix method)
(LinOp.LinOpConv method)
(LinOp.LinOpDCT method)
(LinOp.LinOpDiag method)
(LinOp.LinOpGrad method)
(LinOp.LinOpHess method)
(LinOp.LinOpMatrix method)
(LinOp.LinOpSDFT method)
(LinOp.LinOpShape method)
(LinOp.LinOpSum method)
(LinOp.LinOpXRay method)
(LinOp.SelectorLinOps.LinOpSelector method)
(NonLinOp.ElementWiseOp.OpEWAbs method)
(NonLinOp.ElementWiseOp.OpEWfunc method)
(NonLinOp.ElementWiseOp.OpEWInverse method)
(NonLinOp.ElementWiseOp.OpEWSqrt method)
(NonLinOp.ElementWiseOp.OpEWSquaredMagnitude method)
applyAdjoint() (Abstract.LinOp method)
applyAdjoint_() (Abstract.LinOp method)
(Abstract.OperationsOnMaps.LinOpAdjoint method)
(Abstract.OperationsOnMaps.LinOpComposition method)
(Abstract.OperationsOnMaps.LinOpInversion method)
(Abstract.OperationsOnMaps.LinOpSummation method)
(LinOp.LinOpBroadcast method)
(LinOp.LinOpBroadcastMatrix method)
(LinOp.LinOpConv method)
(LinOp.LinOpDCT method)
(LinOp.LinOpDiag method)
(LinOp.LinOpGrad method)
(LinOp.LinOpHess method)
(LinOp.LinOpMatrix method)
(LinOp.LinOpSDFT method)
(LinOp.LinOpShape method)
(LinOp.LinOpSum method)
(LinOp.LinOpXRay method)
(LinOp.SelectorLinOps.LinOpSelector method)
applyAdjointInverse() (Abstract.LinOp method)
applyAdjointInverse_() (Abstract.LinOp method)
(Abstract.OperationsOnMaps.LinOpAdjoint method)
(Abstract.OperationsOnMaps.LinOpComposition method)
(Abstract.OperationsOnMaps.LinOpInversion method)
(LinOp.LinOpConv method)
(LinOp.LinOpDCT method)
(LinOp.LinOpDiag method)
(LinOp.LinOpSDFT method)
(LinOp.LinOpShape method)
applyGrad() (Abstract.Cost method)
applyGrad_() (Abstract.Cost method)
(Abstract.OperationsOnMaps.CostComposition method)
(Abstract.OperationsOnMaps.CostMultiplication method)
(Abstract.OperationsOnMaps.CostPartialSummation method)
(Abstract.OperationsOnMaps.CostSummation method)
(Cost.CostConst method)
(Cost.CostGoodRoughness method)
(Cost.CostHyperBolic method)
(Cost.CostKullLeib method)
(Cost.CostL1 method)
(Cost.CostL2 method)
(Cost.CostL2Composition method)
(Cost.CostLinear method)
(Cost.CostRobustPenalization method)
applyHHt() (Abstract.LinOp method)
applyHHt_() (Abstract.LinOp method)
(Abstract.OperationsOnMaps.LinOpAdjoint method)
(Abstract.OperationsOnMaps.LinOpComposition method)
(LinOp.LinOpBroadcastMatrix method)
(LinOp.LinOpConv method)
(LinOp.LinOpDCT method)
(LinOp.LinOpDiag method)
(LinOp.LinOpSDFT method)
(LinOp.LinOpShape method)
(LinOp.LinOpSum method)
(LinOp.SelectorLinOps.LinOpSelector method)
applyHtH() (Abstract.LinOp method)
applyHtH_() (Abstract.LinOp method)
(Abstract.OperationsOnMaps.LinOpAdjoint method)
(Abstract.OperationsOnMaps.LinOpComposition method)
(LinOp.LinOpBroadcast method)
(LinOp.LinOpBroadcastMatrix method)
(LinOp.LinOpConv method)
(LinOp.LinOpDCT method)
(LinOp.LinOpDiag method)
(LinOp.LinOpGrad method)
(LinOp.LinOpSDFT method)
(LinOp.LinOpShape method)
(LinOp.LinOpXRay method)
(LinOp.SelectorLinOps.LinOpSelector method)
applyInverse() (Abstract.Map method)
applyInverse_() (Abstract.Map method)
(Abstract.OperationsOnMaps.LinOpAdjoint method)
(Abstract.OperationsOnMaps.MapComposition method)
(Abstract.OperationsOnMaps.MapInversion method)
(LinOp.LinOpBroadcastMatrix method)
(LinOp.LinOpConv method)
(LinOp.LinOpDCT method)
(LinOp.LinOpDiag method)
(LinOp.LinOpSDFT method)
(LinOp.LinOpShape method)
(NonLinOp.ElementWiseOp.OpEWfunc method)
applyJacobianT() (Abstract.Map method)
applyJacobianT_() (Abstract.Cost method)
(Abstract.LinOp method)
(Abstract.Map method)
(Abstract.OperationsOnMaps.MapComposition method)
(Abstract.OperationsOnMaps.MapMultiplication method)
(Abstract.OperationsOnMaps.MapSummation method)
(NonLinOp.ElementWiseOp.OpEWAbs method)
(NonLinOp.ElementWiseOp.OpEWfunc method)
(NonLinOp.ElementWiseOp.OpEWInverse method)
(NonLinOp.ElementWiseOp.OpEWSqrt method)
(NonLinOp.ElementWiseOp.OpEWSquaredMagnitude method)
applyProx() (Abstract.Cost method)
applyProx_() (Abstract.Cost method)
(Abstract.OperationsOnMaps.CostComposition method)
(Abstract.OperationsOnMaps.CostMultiplication method)
(Abstract.OperationsOnMaps.CostSummation method)
(Cost.CostConst method)
(Cost.CostKullLeib method)
(Cost.CostL1 method)
(Cost.CostL2 method)
(Cost.CostL2Composition method)
(Cost.CostLinear method)
(Cost.CostMixNorm21 method)
(Cost.CostMixNorm21NonNeg method)
(Cost.CostMixNormSchatt1 method)
(Cost.CostTV method)
(Cost.IndicatorFunctions.CostComplexRing method)
(Cost.IndicatorFunctions.CostRectangle method)
applyProxFench() (Abstract.Cost method)
applyProxFench_() (Abstract.Cost method)
C
computeCost() (Opti.OutputOpti.OutputOpti method)
(Opti.OutputOpti.OutputOptiConjGrad method)
copyElement() (Abstract.Map method)
Cost (class in Abstract)
(module)
Cost.IndicatorFunctions (module)
CostComplexCircle (class in Cost.IndicatorFunctions)
CostComplexDisk (class in Cost.IndicatorFunctions)
CostComplexRing (class in Cost.IndicatorFunctions)
CostComposition (class in Abstract.OperationsOnMaps)
CostConst (class in Cost)
CostGoodRoughness (class in Cost)
CostHyperBolic (class in Cost)
CostIndicator (class in Cost.IndicatorFunctions)
CostKullLeib (class in Cost)
CostL1 (class in Cost)
CostL2 (class in Cost)
CostL2Composition (class in Cost)
CostLinear (class in Cost)
CostMixNorm21 (class in Cost)
CostMixNorm21NonNeg (class in Cost)
CostMixNormSchatt1 (class in Cost)
CostMultiplication (class in Abstract.OperationsOnMaps)
CostNonNeg (class in Cost.IndicatorFunctions)
CostPartialSummation (class in Abstract.OperationsOnMaps)
CostReals (class in Cost.IndicatorFunctions)
CostRectangle (class in Cost.IndicatorFunctions)
CostRobustPenalization (class in Cost)
CostSummation (class in Abstract.OperationsOnMaps)
CostTV (class in Cost)
ctranspose() (Abstract.LinOp method)
D
doIteration() (Abstract.Opti method)
(Opti.OptiADMM method)
(Opti.OptiChambPock method)
(Opti.OptiConjGrad method)
(Opti.OptiDouglasRachford method)
(Opti.OptiFBS method)
(Opti.OptiFGP method)
(Opti.OptiGradDsct method)
(Opti.OptiPrimalDualCondat method)
(Opti.OptiRichLucy method)
(Opti.OptiVMLMB method)
E
ending_verb() (Abstract.Opti method)
I
init() (Opti.OutputOpti.OutputOpti method)
initialize() (Abstract.Opti method)
(Opti.OptiADMM method)
(Opti.OptiChambPock method)
(Opti.OptiConjGrad method)
(Opti.OptiDouglasRachford method)
(Opti.OptiFBS method)
(Opti.OptiFGP method)
(Opti.OptiGradDsct method)
(Opti.OptiPrimalDualCondat method)
(Opti.OptiRichLucy method)
(Opti.OptiVMLMB method)
L
LinOp (class in Abstract)
(module)
LinOp.SelectorLinOps (module)
LinOpAdjoint (class in Abstract.OperationsOnMaps)
LinOpBroadcast (class in LinOp)
LinOpBroadcastMatrix (class in LinOp)
LinOpComposition (class in Abstract.OperationsOnMaps)
LinOpConv (class in LinOp)
LinOpDCT (class in LinOp)
LinOpDiag (class in LinOp)
LinOpDownsample (class in LinOp.SelectorLinOps)
LinOpGrad (class in LinOp)
LinOpHess (class in LinOp)
LinOpInversion (class in Abstract.OperationsOnMaps)
LinOpMatrix (class in LinOp)
LinOpSDFT (class in LinOp)
LinOpSelector (class in LinOp.SelectorLinOps)
LinOpSelectorPatch (class in LinOp.SelectorLinOps)
LinOpShape (class in LinOp)
LinOpSum (class in LinOp)
LinOpSummation (class in Abstract.OperationsOnMaps)
LinOpXRay (class in LinOp)
M
makeAdjoint_() (Abstract.LinOp method)
(Abstract.OperationsOnMaps.LinOpAdjoint method)
(Abstract.OperationsOnMaps.LinOpComposition method)
(Abstract.OperationsOnMaps.LinOpSummation method)
(LinOp.LinOpBroadcast method)
(LinOp.LinOpBroadcastMatrix method)
(LinOp.LinOpConv method)
(LinOp.LinOpDiag method)
(LinOp.LinOpSum method)
makeComposition() (Abstract.Map method)
makeComposition_() (Abstract.Cost method)
(Abstract.LinOp method)
(Abstract.Map method)
(Abstract.OperationsOnMaps.CostComposition method)
(Abstract.OperationsOnMaps.CostMultiplication method)
(Abstract.OperationsOnMaps.LinOpComposition method)
(Abstract.OperationsOnMaps.LinOpInversion method)
(Abstract.OperationsOnMaps.MapComposition method)
(Abstract.OperationsOnMaps.MapInversion method)
(Abstract.OperationsOnMaps.MapMultiplication method)
(Abstract.OperationsOnMaps.MapSummation method)
(Cost.CostL2 method)
(Cost.CostL2Composition method)
(Cost.CostMixNorm21 method)
(LinOp.LinOpBroadcastMatrix method)
(LinOp.LinOpConv method)
(LinOp.LinOpDiag method)
(LinOp.LinOpSum method)
(LinOp.SelectorLinOps.LinOpDownsample method)
makeHHt() (Abstract.LinOp method)
makeHHt_() (Abstract.LinOp method)
(Abstract.OperationsOnMaps.LinOpAdjoint method)
(Abstract.OperationsOnMaps.LinOpComposition method)
(LinOp.LinOpBroadcastMatrix method)
(LinOp.LinOpConv method)
(LinOp.LinOpDCT method)
(LinOp.LinOpDiag method)
(LinOp.LinOpSDFT method)
(LinOp.LinOpShape method)
(LinOp.LinOpSum method)
(LinOp.SelectorLinOps.LinOpSelector method)
makeHtH() (Abstract.LinOp method)
makeHtH_() (Abstract.LinOp method)
(Abstract.OperationsOnMaps.LinOpAdjoint method)
(Abstract.OperationsOnMaps.LinOpComposition method)
(LinOp.LinOpBroadcast method)
(LinOp.LinOpBroadcastMatrix method)
(LinOp.LinOpConv method)
(LinOp.LinOpDCT method)
(LinOp.LinOpDiag method)
(LinOp.LinOpGrad method)
(LinOp.LinOpHess method)
(LinOp.LinOpSDFT method)
(LinOp.LinOpShape method)
(LinOp.SelectorLinOps.LinOpSelector method)
makeInversion_() (Abstract.LinOp method)
(LinOp.LinOpBroadcastMatrix method)
(LinOp.LinOpConv method)
(LinOp.LinOpDCT method)
(LinOp.LinOpDiag method)
(LinOp.LinOpSDFT method)
makePartialSummation() (Abstract.OperationsOnMaps.CostSummation method)
Map (class in Abstract)
MapComposition (class in Abstract.OperationsOnMaps)
MapInversion (class in Abstract.OperationsOnMaps)
MapMultiplication (class in Abstract.OperationsOnMaps)
MapSummation (class in Abstract.OperationsOnMaps)
minus() (Abstract.Map method)
minus_() (Abstract.Cost method)
(Abstract.Map method)
mpower() (Abstract.Map method)
mpower_() (Abstract.Map method)
(Abstract.OperationsOnMaps.LinOpInversion method)
(Abstract.OperationsOnMaps.MapInversion method)
(LinOp.LinOpDiag method)
mtimes() (Abstract.Map method)
N
NonLinOp (module)
NonLinOp.ElementWiseOp (module)
O
OpEWAbs (class in NonLinOp.ElementWiseOp)
OpEWfunc (class in NonLinOp.ElementWiseOp)
OpEWInverse (class in NonLinOp.ElementWiseOp)
OpEWSqrt (class in NonLinOp.ElementWiseOp)
OpEWSquaredMagnitude (class in NonLinOp.ElementWiseOp)
Opti (class in Abstract)
(module)
Opti.OutputOpti (module)
Opti.TestCvg (module)
OptiADMM (class in Opti)
OptiChambPock (class in Opti)
OptiConjGrad (class in Opti)
OptiDouglasRachford (class in Opti)
OptiFBS (class in Opti)
OptiFGP (class in Opti)
OptiGradDsct (class in Opti)
OptiPrimalDualCondat (class in Opti)
OptiRichLucy (class in Opti)
OptiVMLMB (class in Opti)
OutputOpti (class in Opti.OutputOpti)
OutputOptiConjGrad (class in Opti.OutputOpti)
P
plus() (Abstract.Map method)
plus_() (Abstract.Cost method)
(Abstract.LinOp method)
(Abstract.Map method)
(Abstract.OperationsOnMaps.LinOpSummation method)
(LinOp.LinOpBroadcastMatrix method)
(LinOp.LinOpConv method)
(LinOp.LinOpDiag method)
R
run() (Abstract.Opti method)
S
set_y() (Abstract.Cost method)
(Abstract.OperationsOnMaps.CostComposition method)
setBounds() (Opti.OptiFGP method)
setLambda() (Opti.OptiFGP method)
setLsub() (Abstract.OperationsOnMaps.CostPartialSummation method)
setProxAlgo() (Cost.CostTV method)
starting_verb() (Abstract.Opti method)
T
testConvergence() (Opti.TestCvg.TestCvg method)
(Opti.TestCvg.TestCvgADMM method)
(Opti.TestCvg.TestCvgCombine method)
(Opti.TestCvg.TestCvgCostAbsolute method)
(Opti.TestCvg.TestCvgCostRelative method)
(Opti.TestCvg.TestCvgMaxSnr method)
(Opti.TestCvg.TestCvgStepRelative method)
TestCvg (class in Opti.TestCvg)
TestCvgADMM (class in Opti.TestCvg)
TestCvgCombine (class in Opti.TestCvg)
TestCvgCostAbsolute (class in Opti.TestCvg)
TestCvgCostRelative (class in Opti.TestCvg)
TestCvgMaxSnr (class in Opti.TestCvg)
TestCvgStepRelative (class in Opti.TestCvg)
times() (Abstract.Map method)
times_() (Abstract.Map method)
transpose() (Abstract.LinOp method)
U
update() (Opti.OutputOpti.OutputOpti method)
updateParams() (Abstract.Opti method)